By the way, inserting the word commerce makes the argument too specious. That alone sounds like big brother's poorly supported excuse to tear down the fundamental right of freedom of religion.
I'm not sure I completely follow what you're trying to say but, as I said earlier, when a person or corporation purchases a state or local business license that individual or corporation is obligated to conduct that business as laws of that state require. The license is there to purchase. But the issuing authority is what governs and otherwise assigns conditions to the lawful use and keeping of that license. Hence my use of "commerce". I've also used this term because insofar as I can tell the discussion is about what licensed businesses can do.